Marine Genomics

 A limited search for my PubMed listed publications can be found at this link.

1981. Stinson, C., Crawford, D. L., and Lauthner, J. Sex differences in winter habitat of american kestrels, falco sparverius in georgia. Journal of Field Ornithology 52:29-36.

1983. Crawford, D. L.  Digestion energetics in the toad bufo woodhousei,. Pp. 114. Ecology and Systematics. University of Kansas, Lawrence, KS.

1983. Crawford, D. L., and Rissing, S. W. Regulation of recruitment by individual scouts in formica oreas wheeler (hymenoptera, formicidae). Insectes Sociaux 30:177-183.

1984. Smits, A. W., and Crawford, D. L. Emergence of toads bufo-boreas-halophilus to activity a statistical analysis of contributing cues. Copeia 1984:696-701.

1986. Otis, G. W., Santana, C. E., Crawford, D. L., and Higgins, M. L. The effect of foraging army ants on leaf-litter arthropods. Biotropica 18:56-61.

1989. Crawford, D. L.  Evolutionary and physiological adaptation involving the heart type lactate dehydrogenase locus, in the fish fundulus heteroclitus. Pp. 181. Biological Sciences. Johns Hopkins, Baltimore.

1989. Crawford, D. L., Constantino, H. R., and Powers, D. A. Lactate dehydrogenase-b cdna from the teleost fundulus heteroclitus: Evolutionary implications. Molecular Biology & Evolution 6:369-383.

1989a. Crawford, D. L., and Powers, D. A. Molecular basis of evolutionary adaptation at the lactate dehydrogenase-b locus in the fish fundulus heteroclitus. Proceedings of the National Academy of Sciences of the United States of America 86:9365-9369.

1989b. Crawford, D. L., and Powers, D. A. Molecular basis of evolutionary adaptation in latitudinally extreme populuations of fundulus heteroclitus. Journal of Cellular Biochemistry Supplement 13:115.

1990. Crawford, D. L., Place, A. R., and Powers, D. A. Clinal variation in the specific activity of lactate dehydrogenase-b. Journal of Experimental Zoology 255:110-113.

1990.Crawford, D. L., and Powers, D. A.  Molecular adaptation to the thermal environment: Genetic and physiological mechanisms. Pp. 213-222 in Clegg, M. T., and O'Brien, S. J., eds. Molecular evolution: Proceeding of a ucla colloquium 1989. Wiley-Liss, New York.

1991a.Powers, D. A., Lauerman, T., Crawford, D., and DiMichele, L.  Genetic mechanisms for adapting to a changing environment. Pp. 629-659 in Campbell, A.Baker, B. S., and Jones, E. W., eds. Annual review of genetics. Annual Rev. Inc.

1991b. Powers, D. A., Lauerman, T., Crawford, D., Smith, M., Gonzales-Villasenor, I., and Dimichele, L. The evolutionary significance of genetic variation at enzyme syntehsizing loci in the teleosot fish fundulus heteroclitus. Journal of Fish Biology 39:169-184.

1992. Crawford, D. L., and Powers, D. A. Evolutionary adaptation to different thermal environments via transcriptional regulation. Molecular Biology & Evolution 9:806-813.

1992. Powell, M. A., Crawford, D. L., Lauerman, T., and Powers, D. A. Analysis of cryptic alleles of fundulus heteroclitus lactate dehydrogenase by a novel allele-specific polymerase chain reaction. Molecular Marine Biology & Biotechnology 1:391-396.

1993.Powers, D. A., Smith, M., Gonzalez-Villasenor, I., DiMichelle, L., Crawford, D. L., Bernardi, G., and Lauerman, T.  A multidisciplinary approach to the selectionist/neutralist controversy using the model teleost, fundulus heteroclitus. Pp. 43-108 in Futuyma, D., and Antonovics, J., eds. Oxford surveys in evolutionary biology. Oxford University Press, New York, NY.

1994. Pierce, V. A., and Crawford, D. L. Rapid enzyme assays investigating the variation in the glycolytic pathway in field-caught populations of fundulus heteroclitus. Biochemical Genetics 32:315-330.

1994. Segal, J. A., and Crawford, D. L. Ldh-b enzyme expression: The mechanisms of altered gene expression in acclimation and evolutionary adaptation. American Journal of Physiology 267:R1150-1153.

1995. Crawford, D. L. Nuclear genes from the copepod calanus finmarchicus. Molecular Marine Biology & Biotechnology 4:241-247.

1995. Schulte, P. M., Segal, J. A., Crawford, D. L., and Powers, D. A. Rapid in vivo footprinting method for the detection of DNA-protein interactions in isolated nuclei. Molecular Marine Biology & Biotechnology 4:200-205.

1996. Anchordoguy, T. J., Crawford, D. L., Hardewig, I., and Hand, S. C. Heterogeneity of DNA binding to membranes used in quantitative dot blots. BioTechniques 20:756.

1996. Pierce, V. A., and Crawford, D. L. Variation in the glycolytic pathway: The role of evolutionary and physiological processes. Physiological Zoology 69:489-508.

1996. Segal, J. A., Schulte, P. M., Powers, D. A., and Crawford, D. L. Descriptive and functional characterization of variation in the fundulus heteroclitus ldh-b proximal promoter. Journal of Experimental Zoology 275:355-364.

1997a. Pierce, V. A., and Crawford, D. L. Phylogenetic analysis of glycolytic enzyme expression. Science 276:256-259.

1997b. Pierce, V. A., and Crawford, D. L. Phylogenetic analysis of thermal acclimation of the glycolytic enzymes in the genus fundulus. Physiological Zoology 70:597-609.

1998. Artigues, A., Crawford Douglas, L., Iriarte, A., and Martinez-Carrion, M. Divergent hsc70 binding properties of mitochondrial and cytosolic asparate aminotransferase: Implications for their segragation to different cellular compartments. Journal of Biological Chemistry273:33130-33134.

1999. Crawford, D. L., Pierce, V. A., and Segal, J. A. Evolutionary physiology of closely related taxa: Analyses of enzyme expression. American Zoologist 39:389-400.

1999. Crawford, D. L., Segal, J. A., and Barnett, J. L. Evolutionary analysis of tata-less proximal promoter function. Molecular Biology & Evolution 16:194-207.

1999. Segal, J. A., Barnett, J. L., and Crawford, D. L. Functional analyses of natural variation in sp1 binding sites of a tata-less promoter. Journal of Molecular Evolution 49:736-749.

2000.Artigues, A., Bengoechea-Alonso, M. T., Crawford, D. L., Iriarte, A., and Martinez-Carrion, M.  Biological implication of the different hsc70 binding properties of mitochondrial and cytosolic aspartate aminotransferase. Pp. 33130-33134 in Martinez-Carrion, M.Iriate, A., and Kagan, H., eds. Vitamin b6 dependent proteins, pqq and quinoproteins. Birhauser Verlag, Basel, Switzerland.

2000. Podrabsky, J., E., Javillonar, C., Hand Steven, C., and Crawford, D., L. Intraspecific variation in aerobic metabolism and glycolytic enzyme expression in heart ventricles. American Journal of Physiology. 279:R2344-R2348.

2001. Crawford, D. L. Functional genomics does not have to be limited to a few select organisms. Genome Biology. 2:INTERACTIONS1001 http://www.genomebiology.com/2001/1002/1001/interactions/1001/.

2001. Oleksiak, M. F., Kolell, K., and Crawford, D. L. The utility of natural populations for microarray analyses: Isolation of genes necessary for functional genomic studies. Marine Biotechnology 3:S203-S211.

2002.Crawford, D. L.  Evolution of physiological adapatation in Storey, K. B., and Storey, J. M., eds. Cell and molecular responses to stress. Elsevier Publishing, NY.

2002. Kolell, K. J., and Crawford, D. L. Evolution of sp transcription factors. Molecular Biology & Evolution. 19:216-222.

2002. Oleksiak, M. F., Churchill, G. A., and Crawford, D. L. Variation in gene expression within and among natural populations. Nature Genetics 32:261-266.

2002. Oleksiak, M. F., and Crawford, D. L. 5' genomic structure of human sp3. Molecular Biology & Evolution 19:2026-2029.

2003. Clark, M. S., Crawford Douglas, L., and Cossins, A. Worldwide genomic resources for non-model fish species. Comparative and Functional Genomics 4:502-508.

2004. Paschall, J. E., Oleksiak, M. F., VanWye, J. D., Roach, J. L., Whitehead, J. A., Wyckoff, G. J., Kolell, K. J., and Crawford, D. L. Funnybase: A systems level functional annotation of fundulus ests for the analysis of gene expression. BMC Genomics 5:96.

2005. Cossins, A. R., and Crawford, D. L. Fish as models for environmental genomics. Nature Reviews Genetics 6:324-333.

2005. Oleksiak, M. F., Roach, J. L., and Crawford, D. L. Natural variation in cardiac metabolism and gene expression in fundulus heteroclitus. Nature Genetics 37:67-72.

2005. Whitehead, A., and Crawford, D. Variation in tissue-specific gene expression among natural populations. Genome Biology 6:R13.11-13.14.

2006.Oleksiak, M., F., and Crawford Douglas, L. Functional genomics in fishes, insights into physiological complexity. Pp. 523-550 in Evan, D., and Claiborne, J., eds. The physiology of fishes. CRC Press, Boca Raton.

2006. Richardson, D. E., VanWye, J. D., Miyake, A. M., Cowen, R. K., and Crawford, D. L. High-throughput species identification: From DNA isolation to bioinformatics. Molecular Ecology 7:199-207.

2006a. Whitehead, A., and Crawford, D. L. Variation within and among species in gene expression: Raw material for evolution. Molecular Ecology 15:1197-1211.dlcs_pdf/2006_richardson_mol_ecol_no.pdf

2006b. Whitehead, A., and Crawford, D. L. Neutral and adaptive variation in gene expression. Proc Natl Acad Sci U S A 103:5425-5430.

2007. Burnett, K. G., Bain, L. J., Baldwin, W. S. et al. Fundulus as the premier teleost model in environmental biology: Opportunities for new insights using genomics. Comp Biochem Physiol Part D Genomics Proteomics 2:257-286.

2007. Crawford, D. L. Human reference sequence makes sense of names. Nature 447:142.

2007. Crawford, D. L., and Oleksiak, M. F. The biological importance of measuring individual variation. Journal of Experimental Biology 210:1613-1621.

2008. Vera, J. C., Wheat, C. W., Fescemyer, H. W., Frilander, M. J., Crawford, D. L., Hanski, I., and Marden, J. H. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology 17:1636-1647.

2008. Williams, D. A.Brown, S. D., and Crawford, D. L. Contemporary and historical influences on the genetic structure of the estuarine-dependent gulf killifish fundulus grandis. Marine Ecology-Progress Series 373:111-121.

2009. Everett, M. V., and Crawford, D. L. Adaptation versus allometry:  Population and body mass effects on hypoxic metabolism in fundulus grandis. Physiological and Biochemical Zoology Accepted.

2009. Scott, C. P., VanWye, J., McDonald, M. D., and Crawford, D. L. Technical analysis of cdna microarrays. PLoS ONE 4:e4486.

2009. Scott, C. P., Williams, D. A., and Crawford Douglas, L. The effect of genetic and environmental variation on gene expression Molecular Ecology 18:2832-2843.